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  Main

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  Blueprint

fastqEngine

A web-based user interface (WUI) for getting gene expression matrix from scratch with just few clicks

Inspiration

What it does

• Let user select RNA-seq raw data files (.fastq format), often from people with diseases such as cancer
• Operates locally -- no risk of exposing data files potentially subject to privacy and/or intellectual property (IP) rights

How I built it

• Use a whiteboard to brainstorm!
• Present my idea/progress periodically to others

Challenges I ran into

• Triggering execution of bash shell from html and Javascript
• Retrieving actual vs. fakepaths based on user input

Accomplishments that I'm proud of

• Make a solution to real-world problem that I personally encountered come true
• Being a "solo hacker" in a hackathon for the first time

What I learned (beyond the organizational detail)

• Efficient loading of .css and .js using the minimalized file version

What's next for fastqEngine

• Scalability
• Implementation on remote computer cluster
• Implementation on cloud platform
• Adaptabiility as new experimental platforms come up

Built With

• javascript
• python
• shell